diff --git a/.gitignore b/.gitignore
index 6b1e54c64..64ed357b6 100644
--- a/.gitignore
+++ b/.gitignore
@@ -10,3 +10,6 @@ var/dirty.db
 bin/convertSettings.json
 *~
 *.patch
+src/static/js/jquery.js
+src/static/js/prefixfree.js
+npm-debug.log
diff --git a/bin/installDeps.sh b/bin/installDeps.sh
index 270ec98cd..640f5b132 100755
--- a/bin/installDeps.sh
+++ b/bin/installDeps.sh
@@ -55,7 +55,13 @@ if [ ! -f $settings ]; then
 fi
 
 echo "Ensure that all dependencies are up to date..."
-npm install || { 
+(
+  mkdir -p node_modules
+  cd node_modules
+  [ -e pluginomatic_etherpad-lite ] || ln -s ../src pluginomatic_etherpad-lite
+  cd pluginomatic_etherpad-lite
+  npm install
+) || { 
   rm -rf node_modules
   exit 1 
 }
@@ -63,8 +69,8 @@ npm install || {
 echo "Ensure jQuery is downloaded and up to date..."
 DOWNLOAD_JQUERY="true"
 NEEDED_VERSION="1.7.1"
-if [ -f "static/js/jquery.js" ]; then
-  VERSION=$(cat static/js/jquery.js | head -n 3 | grep -o "v[0-9]\.[0-9]\(\.[0-9]\)\?");
+if [ -f "src/static/js/jquery.js" ]; then
+  VERSION=$(cat src/static/js/jquery.js | head -n 3 | grep -o "v[0-9]\.[0-9]\(\.[0-9]\)\?");
   
   if [ ${VERSION#v} = $NEEDED_VERSION ]; then
     DOWNLOAD_JQUERY="false"
@@ -72,14 +78,14 @@ if [ -f "static/js/jquery.js" ]; then
 fi
 
 if [ $DOWNLOAD_JQUERY = "true" ]; then
-  curl -lo static/js/jquery.js http://code.jquery.com/jquery-$NEEDED_VERSION.js || exit 1
+  curl -lo src/static/js/jquery.js http://code.jquery.com/jquery-$NEEDED_VERSION.js || exit 1
 fi
 
 echo "Ensure prefixfree is downloaded and up to date..."
 DOWNLOAD_PREFIXFREE="true"
 NEEDED_VERSION="1.0.4"
-if [ -f "static/js/prefixfree.js" ]; then
-  VERSION=$(cat static/js/prefixfree.js | grep "PrefixFree" | grep -o "[0-9].[0-9].[0-9]");
+if [ -f "src/static/js/prefixfree.js" ]; then
+  VERSION=$(cat src/static/js/prefixfree.js | grep "PrefixFree" | grep -o "[0-9].[0-9].[0-9]");
   
   if [ $VERSION = $NEEDED_VERSION ]; then
     DOWNLOAD_PREFIXFREE="false"
@@ -87,7 +93,7 @@ if [ -f "static/js/prefixfree.js" ]; then
 fi
 
 if [ $DOWNLOAD_PREFIXFREE = "true" ]; then
-  curl -lo static/js/prefixfree.js -k https://raw.github.com/LeaVerou/prefixfree/master/prefixfree.js || exit 1
+  curl -lo src/static/js/prefixfree.js -k https://raw.github.com/LeaVerou/prefixfree/master/prefixfree.js || exit 1
 fi
 
 #Remove all minified data to force node creating it new
@@ -98,12 +104,12 @@ echo "ensure custom css/js files are created..."
 
 for f in "index" "pad" "timeslider"
 do
-  if [ ! -f "static/custom/$f.js" ]; then
-    cp -v "static/custom/js.template" "static/custom/$f.js" || exit 1
+  if [ ! -f "src/static/custom/$f.js" ]; then
+    cp -v "src/static/custom/js.template" "src/static/custom/$f.js" || exit 1
   fi
   
-  if [ ! -f "static/custom/$f.css" ]; then
-    cp -v "static/custom/css.template" "static/custom/$f.css" || exit 1
+  if [ ! -f "src/static/custom/$f.css" ]; then
+    cp -v "src/static/custom/css.template" "src/static/custom/$f.css" || exit 1
   fi
 done
 
diff --git a/bin/run.sh b/bin/run.sh
index 74a16395e..296b6754c 100755
--- a/bin/run.sh
+++ b/bin/run.sh
@@ -21,8 +21,7 @@ if [ "$(id -u)" -eq 0 ]; then
 fi
 
 #prepare the enviroment
-#bin/installDeps.sh $* || exit 1
-npm link ./src
+bin/installDeps.sh $* || exit 1
 
 #Move to the node folder and start
 echo "start..."